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bibtex.py

# This file is part of Rubber and thus covered by the GPL
# (c) Emmanuel Beffara, 2002--2006
"""
BibTeX support for Rubber

This module is a special one: it is triggered by the macros \\bibliography and
\\bibliographystyle and not as a package, so the main system knows about it.
The module provides the following commands:

  path <dir> = adds <dir> to the search path for databases
  stylepath <dir> = adds <dir> to the search path for styles
"""

# Stop python 2.2 from calling "yield" statements syntax errors.
from __future__ import generators

import os, sys
from os.path import *
import re, string
import subprocess

#from grubber import _
#from grubber import *
from msg import _, msg
from plugins import TexModule

re_bibdata = re.compile(r"\\bibdata{(?P<data>.*)}")
re_citation = re.compile(r"\\citation{(?P<cite>.*)}")
re_undef = re.compile("LaTeX Warning: Citation `(?P<cite>.*)' .*undefined.*")

# The regular expression that identifies errors in BibTeX log files is heavily
# heuristic. The remark is that all error messages end with a text of the form
# "---line xxx of file yyy" or "---while reading file zzz". The actual error
# is either the text before the dashes or the text on the previous line.

re_error = re.compile(
    "---(line (?P<line>[0-9]+) of|while reading) file (?P<file>.*)")

00039 class BibTex(TexModule):
    """
    This class is the module that handles BibTeX in Rubber. It provides the
    funcionality required when compiling documents as well as material to
    parse blg files for diagnostics.
    """
00045     def __init__ (self, doc, dict, base=None):
        """
        Initialize the state of the module and register appropriate functions
        in the main process. The extra arugment 'base' can be used to specify
        the base name of the aux file, it defaults to the document name.
        """
        self.doc = doc
        self.env = doc.env

        if not(base):
            self.base = doc.src_base
        else:
            self.base = base

        self.bblfile = self.base + ".bbl"
        self.blgfile = self.base + ".blg"
        self.auxfile = self.base + ".aux"

#        cwd = self.env.vars["cwd"]
#        cwd = ""
#        self.bib_path = [cwd]
#        if doc.src_path != cwd:
#            self.bib_path.append(doc.src_path)
#        self.bst_path = [cwd]
        self.bib_path = []
        self.bst_path = []

        self.undef_cites = None
        self.used_cites = None
        self.style = None
        self.set_style("plain")
        self.db = {}
        self.sorted = 1
        self.run_needed = 0

    #
    # The following method are used to specify the various datafiles that
    # BibTeX uses.
    #

    def do_path (self, path):
        self.bib_path.append(self.doc.abspath(path))

    def do_stylepath (self, path):
        self.bst_path.append(self.doc.abspath(path))

    def do_sorted (self, mode):
        self.sorted = mode in ("true", "yes", "1")

00094     def add_db (self, name):
        """
        Register a bibliography database file.
        """
        for dir in self.bib_path:
            bib = join(dir, name + ".bib")
            if exists(bib):
                self.db[name] = bib
                self.doc.sources[bib] = DependLeaf(self.env, bib)
                self.doc.not_included.append(bib)
                return

00106     def set_style (self, style):
        """
        Define the bibliography style used. This method is called when
        \\bibliographystyle is found. If the style file is found in the
        current directory, it is considered a dependency.
        """
        if self.style:
            old_bst = self.style + ".bst"
            if exists(old_bst) and self.doc.sources.has_key(old_bst):
                del self.doc.sources[old_bst]

        self.style = style
        for dir in self.bst_path:
            new_bst = join(dir, style + ".bst")
            if exists(new_bst):
                self.bst_file = new_bst
                self.doc.sources[new_bst] = DependLeaf(self.env, new_bst)
                return
        self.bst_file = None

    #
    # The following methods are responsible of detecting when running BibTeX
    # is needed and actually running it.
    #

00131     def pre_compile (self):
        """
        Run BibTeX if needed before the first compilation. This function also
        checks if BibTeX has been run by someone else, and in this case it
        tells the system that it should recompile the document.
        """
        if exists(self.doc.auxfile):
            self.used_cites, self.prev_dbs = self.parse_aux()
        else:
            self.prev_dbs = None
        if self.doc.log.lines:
            self.undef_cites = self.list_undefs()

        self.run_needed = self.first_run_needed()
        if self.doc.must_compile:
            # If a LaTeX compilation is going to happen, it is not necessary
            # to bother with BibTeX yet.
            return 0
        if self.run_needed:
            return self.run()

        if (exists(self.bblfile) and
            getmtime(self.bblfile) > getmtime(self.doc.logfile)):
            self.doc.must_compile = 1
        return 0

00157     def first_run_needed (self):
        """
        The condition is only on the database files' modification dates, but
        it would be more clever to check if the results have changed.
        BibTeXing is also needed when the last run of BibTeX failed, and in
        the very particular case when the style has changed since last
        compilation.
        """
        if not exists(self.auxfile):
            return 0
        if not exists(self.blgfile):
            return 1

        dtime = getmtime(self.blgfile)
        for db in self.db.values():
            if getmtime(db) > dtime:
                msg.log(_("bibliography database %s was modified") % db, pkg="bibtex")
                return 1

        blg = open(self.blgfile)
        for line in blg.readlines():
            if re_error.search(line):
                blg.close()
                msg.log(_("last BibTeXing failed"), pkg="bibtex")
                return 1
        blg.close()

        if self.style_changed():
            return 1
        if self.bst_file and getmtime(self.bst_file) > dtime:
            msg.log(_("the bibliography style file was modified"), pkg="bibtex")
            return 1
        return 0

00191     def parse_aux (self):
        """
        Parse the aux files and return the list of all defined citations and
        the list of databases used.
        """
        last = 0
        cites = {}
        dbs = []
        auxfiles = [self.doc.auxfile]
        if self.auxfile != self.doc.auxfile:
            auxfiles.append(self.auxfile)

        for auxname in auxfiles:
            aux = open(auxname)
            for line in aux:
                m = re_citation.match(line)
                if m:
                    cite = m.group("cite")
                    if not cites.has_key(cite):
                        last = last + 1
                        cites[cite] = last
                    continue
                m = re_bibdata.match(line)
                if m:
                    dbs.extend(m.group("data").split(","))
            aux.close()
        dbs.sort()

        if self.sorted:
            list = cites.keys()
            list.sort()
            return list, dbs
        else:
            list = [(n,c) for (c,n) in cites.items()]
            list.sort()
            return [c for (n,c) in list], dbs

00228     def list_undefs (self):
        """
        Return the list of all undefined citations.
        """
        cites = {}
        for line in self.doc.log.lines:
            match = re_undef.match(line)
            if match:
                cites[match.group("cite")] = None
        list = cites.keys()
        list.sort()
        return list

00241     def post_compile (self):
        """
        This method runs BibTeX if needed to solve undefined citations. If it
        was run, then force a new LaTeX compilation.
        """
        if not self.bibtex_needed():
            msg.log(_("no BibTeXing needed"), pkg="bibtex")
            return 0
        return self.run()

00251     def run (self):
        """
        This method actually runs BibTeX with the appropriate environment
        variables set.
        """
        msg.progress(_("running BibTeX on %s") % self.base)
        doc = {}
        if len(self.bib_path) != 1:
            os.environ["BIBINPUTS"] = string.join(self.bib_path +
                [os.getenv("BIBINPUTS", "")], ":")
        if len(self.bst_path) != 1:
            os.environ["BSTINPUTS"] = string.join(self.bst_path +
                [os.getenv("BSTINPUTS", "")], ":")
        rc = subprocess.call(["bibtex", self.base])
        if rc != 0:
            msg.info(_("There were errors making the bibliography."))
            return 1
        self.run_needed = 0
        self.doc.must_compile = 1
        return 0

00272     def bibtex_needed (self):
        """
        Return true if BibTeX must be run.
        """
        if self.run_needed:
            return 1
        msg.log(_("checking if BibTeX must be run..."), pkg="bibtex")

        newcites, dbs = self.parse_aux()

        # If there was a list of used citations, we check if it has
        # changed. If it has, we have to rerun.

        if self.prev_dbs is not None and self.prev_dbs != dbs:
            msg.log(_("the set of databases changed"), pkg="bibtex")
            self.prev_dbs = dbs
            self.used_cites = newcites
            self.undef_cites = self.list_undefs()
            return 1
        self.prev_dbs = dbs

        # If there was a list of used citations, we check if it has
        # changed. If it has, we have to rerun.

        if self.used_cites and newcites != self.used_cites:
            msg.log(_("the list of citations changed"), pkg="bibtex")
            self.used_cites = newcites
            self.undef_cites = self.list_undefs()
            return 1
        self.used_cites = newcites

        # If there was a list of undefined citations, we check if it has
        # changed. If it has and it is not empty, we have to rerun.

        if self.undef_cites:
            new = self.list_undefs()
            if new == []:
                msg.log(_("no more undefined citations"), pkg="bibtex")
                self.undef_cites = new
            else:
                for cite in new:
                    if cite in self.undef_cites:
                        continue
                    msg.log(_("there are new undefined citations"), pkg="bibtex")
                    self.undef_cites = new
                    return 1
                msg.log(_("there is no new undefined citation"), pkg="bibtex")
                self.undef_cites = new
                return 0
        else:
            self.undef_cites = self.list_undefs()

        # At this point we don't know if undefined citations changed. If
        # BibTeX has not been run before (i.e. there is no log file) we know
        # that it has to be run now.

        if not exists(self.blgfile):
            msg.log(_("no BibTeX log file"), pkg="bibtex")
            return 1

        # Here, BibTeX has been run before but we don't know if undefined
        # citations changed.

        if self.undef_cites == []:
            msg.log(_("no undefined citations"), pkg="bibtex")
            return 0

        if getmtime(self.blgfile) < getmtime(self.doc.logfile):
            msg.log(_("BibTeX's log is older than the main log"), pkg="bibtex")
            return 1

        return 0

    def clean (self):
        self.doc.remove_suffixes([".bbl", ".blg"])

    #
    # The following method extract information from BibTeX log files.
    #

00352     def style_changed (self):
        """
        Read the log file if it exists and check if the style used is the one
        specified in the source. This supposes that the style is mentioned on
        a line with the form 'The style file: foo.bst'.
        """
        if not exists(self.blgfile):
            return 0
        log = open(self.blgfile)
        line = log.readline()
        while line != "":
            if line.startswith("The style file: "):
                if line.rstrip()[16:-4] != self.style:
                    msg.log(_("the bibliography style was changed"), pkg="bibtex")
                    log.close()
                    return 1
            line = log.readline()
        log.close()
        return 0

00372     def get_errors (self):
        """
        Read the log file, identify error messages and report them.
        """
        if not exists(self.blgfile):
            return
        log = open(self.blgfile)
        last_line = ""
        for line in log:
            m = re_error.search(line)
            if m:
                # TODO: it would be possible to report the offending code.
                if m.start() == 0:
                    text = string.strip(last_line)
                else:
                    text = string.strip(line[:m.start()])
                line = m.group("line")
                if line: line = int(line)
                d = {
                    "pkg": "bibtex",
                    "kind": "error",
                    "text": text
                    }
                d.update( m.groupdict() )

                # BibTeX does not report the path of the database in its log.

                file = d["file"]
                if file[-4:] == ".bib":
                    file = file[:-4]
                if self.db.has_key(file):
                    d["file"] = self.db[file]
                elif self.db.has_key(file + ".bib"):
                    d["file"] = self.db[file + ".bib"]
                yield d
            last_line = line
        log.close()


00411 class Module(BibTex):
    """
    Module to load to handle a bibtex
    """

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